MmuEX6048684 @ mm10
Exon Skipping
Gene
ENSMUSG00000058806 | Col13a1
Description
collagen, type XIII, alpha 1 [Source:MGI Symbol;Acc:MGI:1277201]
Coordinates
chr10:61885688-61890144:-
Coord C1 exon
chr10:61890079-61890144
Coord A exon
chr10:61887249-61887356
Coord C2 exon
chr10:61885688-61885714
Length
108 bp
Sequences
Splice sites
3' ss Seq
GCATATTTCTCCAACTTCAGGGG
3' ss Score
6.46
5' ss Seq
CCTGTAAGT
5' ss Score
7.52
Exon sequences
Seq C1 exon
CTGTTGCCTCTACTCAATTCAGTGCGGCTGGCTCCACCCCCAGTCATTAAAAGGCGGACCTTTCAG
Seq A exon
GGGGAACAAAGTCAGACTGGCATCCAAGGCCCTCCAGGGCCACCGGGCCCCCCAGGACCAAGTGGCCCTCTGGGACACCCAGGACTGCCAGGGCCTATAGGGCCACCT
Seq C2 exon
GGTTTACCGGGGCCTCCTGGACCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000058806-'22-19,'22-18,24-19=AN
Average complexity
A_C2
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.909 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=PU(4.6=13.6)
A:
PF0139113=Collagen=FE(53.8=100),PF0139113=Collagen=PU(19.6=30.6)
C2:
PF0139113=Collagen=FE(12.3=100),PF0139113=Collagen=FE(14.3=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TTGCCTCTACTCAATTCAGTGCG
R:
CTTTGGTCCAGGAGGCCCC
Band lengths:
90-198
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types