MmuEX6048684 @ mm9
Exon Skipping
Gene
ENSMUSG00000058806 | Col13a1
Description
collagen, type XIII, alpha 1 [Source:MGI Symbol;Acc:MGI:1277201]
Coordinates
chr10:61348436-61352892:-
Coord C1 exon
chr10:61352827-61352892
Coord A exon
chr10:61349997-61350104
Coord C2 exon
chr10:61348436-61348462
Length
108 bp
Sequences
Splice sites
3' ss Seq
GCATATTTCTCCAACTTCAGGGG
3' ss Score
6.46
5' ss Seq
CCTGTAAGT
5' ss Score
7.52
Exon sequences
Seq C1 exon
CTGTTGCCTCTACTCAATTCAGTGCGGCTGGCTCCACCCCCAGTCATTAAAAGGCGGACCTTTCAG
Seq A exon
GGGGAACAAAGTCAGACTGGCATCCAAGGCCCTCCAGGGCCACCGGGCCCCCCAGGACCAAGTGGCCCTCTGGGACACCCAGGACTGCCAGGGCCTATAGGGCCACCT
Seq C2 exon
GGTTTACCGGGGCCTCCTGGACCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000058806-'17-18,'17-17,18-18=AN
Average complexity
A_C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.909 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=PU(4.6=13.6)
A:
PF0139113=Collagen=FE(56.5=100),PF0139113=Collagen=PU(20.0=30.6)
C2:
PF0139113=Collagen=FE(12.9=100),PF0139113=Collagen=FE(14.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGCCTCTACTCAATTCAGTGCG
R:
CTTTGGTCCAGGAGGCCCC
Band lengths:
90-198
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: