GgaEX1016358 @ galGal3
Exon Skipping
Gene
ENSGALG00000004286 | COL13A1
Description
NA
Coordinates
chr6:12113580-12118087:+
Coord C1 exon
chr6:12113580-12113645
Coord A exon
chr6:12116608-12116724
Coord C2 exon
chr6:12118061-12118087
Length
117 bp
Sequences
Splice sites
3' ss Seq
CTTCTCTTAACAAACCTCAGGGT
3' ss Score
5.2
5' ss Seq
CCTGTAAGT
5' ss Score
7.52
Exon sequences
Seq C1 exon
CTGTTGCCTCTCCTCAATTCAGTGCGGCTGGCTCCACCTCCGGTCATAAAGAGACGCACTTTCCAG
Seq A exon
GGTGAACAAGGACAAGCAGGAATCCAAGGTCCTCCGGGGCCACCCGGCCCGCCAGGGCCTGCTGGACCAGCTGGACCCGAGGGAACCCCAGGACAGCCTGGACCGATTGGGCCACCT
Seq C2 exon
GGCTTACCTGGGCCTCCTGGACCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004286-'11-14,'11-12,12-14=AN
Average complexity
A_C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.909 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=FE(70.4=100),PF0139113=Collagen=PU(13.6=20.5)
A:
PF0139113=Collagen=FE(59.4=100),PF0139113=Collagen=PU(14.7=35.9)
C2:
PF0139113=Collagen=PD(13.3=66.7),PF0139113=Collagen=FE(20.8=100),PF0139113=Collagen=PU(12.9=66.7)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGCCTCTCCTCAATTCAGTGC
R:
CTTTGGTCCAGGAGGCCCAG
Band lengths:
90-207
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]