RnoEX6062716 @ rn6
Exon Skipping
Gene
ENSRNOG00000000552 | Col13a1
Description
collagen type XIII alpha 1 chain [Source:RGD Symbol;Acc:1595704]
Coordinates
chr20:31503121-31507218:-
Coord C1 exon
chr20:31507153-31507218
Coord A exon
chr20:31504325-31504432
Coord C2 exon
chr20:31503121-31503147
Length
108 bp
Sequences
Splice sites
3' ss Seq
CATGTTTTCTCTAACTTCAGGGG
3' ss Score
8.95
5' ss Seq
CCTGTAAGT
5' ss Score
7.52
Exon sequences
Seq C1 exon
CTGCTGCCTCTCCTCAATTCAGTGCGGCTGGCTCCACCCCCAGTCATTAAAAGGCGGACCTTTCAG
Seq A exon
GGGGAACAAAGCCAGGCTGGCATCCAAGGCCCTCCAGGGCCACCGGGCCCCCCAGGACCAATTGGCCCTCTGGGACACCCAGGACTGCCAGGGCCTATAGGGCCACCT
Seq C2 exon
GGTTTACCCGGGCCTCCTGGACCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000000552-'16-19,'16-18,17-19=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.773 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=PU(4.7=13.6)
A:
PF0139113=Collagen=FE(54.7=100),PF0139113=Collagen=PU(24.1=38.9)
C2:
PF0139113=Collagen=FE(12.5=100),PF0139113=Collagen=FE(13.8=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TGCTGCCTCTCCTCAATTCAG
R:
CTTTGGTCCAGGAGGCCCG
Band lengths:
92-200
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]