DreEX6060104 @ danRer10
Exon Skipping
Gene
ENSDARG00000091398 | COL13A1
Description
collagen, type XIII, alpha 1 [Source:HGNC Symbol;Acc:HGNC:2190]
Coordinates
chr13:7687157-7691905:+
Coord C1 exon
chr13:7687157-7687198
Coord A exon
chr13:7691058-7691150
Coord C2 exon
chr13:7691843-7691905
Length
93 bp
Sequences
Splice sites
3' ss Seq
GCTAACTTCCTGACTCTCAGCAG
3' ss Score
2.41
5' ss Seq
CCGGTAAGT
5' ss Score
10.91
Exon sequences
Seq C1 exon
AAACGCCGTATTGTCAACGCCTCAGCTGGAGGACAGGCCACA
Seq A exon
CAGGGTGAGCCTGGAGCACAAGGACCACCGGGACCTCCTGGCCCCCCAGGCCCACCTGGGCCTCTTGGCCTAACTGGTGCTATTGGGCCTCCG
Seq C2 exon
AAATGTTGGGGACCCAGGGGTTACACTGACTGTACCAAAATGCTGAGGACCGGGGGGAGGGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000091398-'11-15,'11-13,13-15=AN
Average complexity
A_C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=PU(14.5=57.1)
A:
PF0139113=Collagen=FE(68.2=100)
C2:
PF0139113=Collagen=PD(18.2=38.1),PF0139113=Collagen=PU(6.9=19.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAACGCCGTATTGTCAACGCC
R:
CCGGTCCTCAGCATTTTGGTA
Band lengths:
95-188
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]