MmuEX6085236 @ mm10
Exon Skipping
Gene
ENSMUSG00000063564 | Col23a1
Description
collagen, type XXIII, alpha 1 [Source:MGI Symbol;Acc:MGI:2653243]
Coordinates
chr11:51551976-51558464:+
Coord C1 exon
chr11:51551976-51552002
Coord A exon
chr11:51557471-51557587
Coord C2 exon
chr11:51558429-51558464
Length
117 bp
Sequences
Splice sites
3' ss Seq
TCAACTCATGTGTCTTTCAGGGA
3' ss Score
9.29
5' ss Seq
GCGGTAAGA
5' ss Score
9.63
Exon sequences
Seq C1 exon
GGTACACCGGGAGACTTTGGCCCGCGG
Seq A exon
GGAGCCCAAGGGCAAGATGGAGTTGCAGGACCACCGGGGCCTCCTGGACCACCTGGGGCCCGGGGCCCTCCTGGTGACACTGGGAAAGATGGCCCCCGAGGAGCGCAAGGCCCAGCG
Seq C2 exon
GGTCCCAGAGGAGAGCCCGGACAAGATGGCGAGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000063564-'12-14,'12-13,16-14
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=PD(12.5=77.8),PF0139113=Collagen=FE(11.8=100)
A:
PF0139113=Collagen=FE(55.9=100),PF0139113=Collagen=PU(21.5=43.6)
C2:
PF0139113=Collagen=PD(5.9=33.3),PF0139113=Collagen=FE(13.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types