HsaEX6101492 @ hg38
Exon Skipping
Gene
ENSG00000050767 | COL23A1
Description
collagen type XXIII alpha 1 chain [Source:HGNC Symbol;Acc:HGNC:22990]
Coordinates
chr5:178262217-178267333:-
Coord C1 exon
chr5:178267307-178267333
Coord A exon
chr5:178263208-178263324
Coord C2 exon
chr5:178262217-178262252
Length
117 bp
Sequences
Splice sites
3' ss Seq
CCAAGCCCCATCTCTTTCAGGGA
3' ss Score
7.55
5' ss Seq
GCGGTAAGA
5' ss Score
9.63
Exon sequences
Seq C1 exon
GGTGCACCAGGAGACTTTGGCCCCCGG
Seq A exon
GGAGACCAAGGACAAGATGGAGCTGCTGGGCCTCCGGGGCCCCCTGGACCTCCTGGGGCCCGGGGCCCTCCTGGCGACACTGGGAAAGATGGCCCCAGGGGAGCACAAGGCCCAGCG
Seq C2 exon
GGCCCCAAAGGAGAGCCCGGACAAGACGGCGAGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000050767-'26-45,'26-44,29-45=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=PD(12.3=77.8),PF0139113=Collagen=FE(10.5=100)
A:
PF0139113=Collagen=PD(0.1=0.0),PF0139113=Collagen=FE(48.7=100),PF0139113=Collagen=PU(21.9=35.9)
C2:
PF0139113=Collagen=PD(12.0=83.3),PF0139113=Collagen=FE(17.7=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains