GgaEX1016559 @ galGal4
Exon Skipping
Gene
ENSGALG00000006708 | COL23A1
Description
collagen, type XXIII, alpha 1 [Source:HGNC Symbol;Acc:HGNC:22990]
Coordinates
chr13:13585052-13590810:+
Coord C1 exon
chr13:13585052-13585078
Coord A exon
chr13:13590222-13590231
Coord C2 exon
chr13:13590775-13590810
Length
10 bp
Sequences
Splice sites
3' ss Seq
3' ss Score
5' ss Seq
5' ss Score
Exon sequences
Seq C1 exon
GGTGAAGCAGGGGACGTCGGCCCGAGG
Seq A exon
GGCGATCAAG
Seq C2 exon
GGTCTTAAAGGCGAGCCAGGGGAGGACGGCCTTGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006708-MICROEX1-2/2
Average complexity
MIC-M
Mappability confidence:
NA
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=FE(13.6=100),PF0139113=Collagen=PU(10.7=88.9)
A:
NA
C2:
PF0139113=Collagen=FE(18.6=100),PF0139113=Collagen=FE(14.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]