BtaEX6030127 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000017282 | COL25A1
Description
collagen, type XXV, alpha 1 [Source:HGNC Symbol;Acc:HGNC:18603]
Coordinates
chr6:17542435-17544883:+
Coord C1 exon
chr6:17542435-17542509
Coord A exon
chr6:17543252-17543359
Coord C2 exon
chr6:17544848-17544883
Length
108 bp
Sequences
Splice sites
3' ss Seq
TGTCCCCTTCTGCACTGCAGGGT
3' ss Score
8.99
5' ss Seq
CCCGTGAGT
5' ss Score
8.4
Exon sequences
Seq C1 exon
CAGATGGTGTTTCCTAAAATCAATCATGGGTTTCTCTCTGCTGATCAGCAGCTCATTAAACGCCGCCTGATTAAG
Seq A exon
GGTGACCAAGGTCAGGCTGGGCCGCCAGGCCCTCCGGGCCCACCGGGCCCAAGAGGGCCGCCTGGGGACACAGGGAAGGATGGCCCCCGCGGAATGCCAGGCATGCCC
Seq C2 exon
GGTGAGCCAGGGAAACCAGGAGAACAAGGCTTGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000017282-'2-4,'2-3,3-4=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=PU(1.3=4.0)
A:
PF0139113=Collagen=FE(46.1=100)
C2:
PF0139113=Collagen=FE(14.5=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGTGTTTCCTAAAATCAATCATGGG
R:
CATCAAGCCTTGTTCTCCTGGT
Band lengths:
107-215
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]