MmuEX6074102 @ mm9
Exon Skipping
Gene
ENSMUSG00000058897 | Col25a1
Description
collagen, type XXV, alpha 1 [Source:MGI Symbol;Acc:MGI:1924268]
Coordinates
chr3:130178511-130181938:+
Coord C1 exon
chr3:130178511-130178582
Coord A exon
chr3:130179287-130179394
Coord C2 exon
chr3:130181903-130181938
Length
108 bp
Sequences
Splice sites
3' ss Seq
ATTTCCTTCCTCCATTGCAGGGT
3' ss Score
11.49
5' ss Seq
CCTGTGAGT
5' ss Score
7.21
Exon sequences
Seq C1 exon
ATGGTGTTTCCTAAAATCAATCACGGCTTTCTCTCTGCTGATCAGCAGCTCATTAAACGCCGGCTGATTAAG
Seq A exon
GGTGACCAAGGACAGGCAGGGCCTCCAGGACCTCCAGGCCCTCCTGGTCCAAGAGGCCCACCTGGGGACACAGGAAAGGACGGCCCCCGAGGAATGCCAGGAGTACCT
Seq C2 exon
GGTGAACCAGGAAAACCAGGAGAACAAGGCTTGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000058897-'10-9,'10-8,11-9=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.975 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=FE(34.7=100)
A:
PF0139113=Collagen=FE(67.9=100),PF0139113=Collagen=PU(35.1=54.1)
C2:
PF0139113=Collagen=FE(22.6=100),PF0139113=Collagen=FE(21.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTGTTTCCTAAAATCAATCACGGC
R:
CATCAAGCCTTGTTCTCCTGGT
Band lengths:
106-214
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: