HsaEX1009376 @ hg38
Exon Skipping
Gene
ENSG00000188517 | COL25A1
Description
collagen type XXV alpha 1 chain [Source:HGNC Symbol;Acc:HGNC:18603]
Coordinates
chr4:108920578-108974393:-
Coord C1 exon
chr4:108974367-108974393
Coord A exon
chr4:108940539-108940646
Coord C2 exon
chr4:108920578-108920604
Length
108 bp
Sequences
Splice sites
3' ss Seq
TGTTCCCTTCTCCATCACAGGGT
3' ss Score
8.99
5' ss Seq
CCCGTGAGT
5' ss Score
8.4
Exon sequences
Seq C1 exon
GGAGAACAAGGTGATCAGGGACCTAGG
Seq A exon
GGTGACCAAGGACAGGCAGGGCCTCCAGGACCCCCTGGCCCTCCAGGCCCAAGAGGGCCACCTGGGGACACAGGGAAAGATGGCCCCCGTGGAATGCCAGGAGTACCC
Seq C2 exon
GGTCCTCTAGGGCCTCCGGGACAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000188517_MULTIEX1-3/4=C1-C2
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=FE(16.7=100)
A:
PF0139113=Collagen=FE(61.4=100),PF0139113=Collagen=PU(0.1=0.0)
C2:
PF0139113=Collagen=PD(10.5=66.7),PF0139113=Collagen=FE(13.8=100)
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains