Special

ENSG00000188517 @ hg38

Biotype
protein_coding
Gene Symbol
COL25A1
Description
collagen type XXV alpha 1 chain [Source:HGNC Symbol;Acc:HGNC:18603]
Coordinates
chr4:108810721-109302657:-
Assembly
Other assemblies

GENOMIC BROWSER[edit]


EXPRESSION VALUES[edit]


SPECIAL DATASETS

  • The Cancer Genome Atlas (TCGA)
  • Genotype-Tissue Expression Project (GTEx)
  • Autistic and control brains
  • Pre-implantation embryo development

EVENTS AND AS PROFILES[edit]

Associated events[edit]

Event
Type
Length
Coordinates
Strand
PSI Average
PSI Range
Annotated Functions
Exon Skipping
60
chr4:108942209-108942268
-
51.87
100
0
Exon Skipping
24
chr4:108852902-108852925
-
31.21
96.94
0
Exon Skipping
45
chr4:108884178-108884222
-
25.42
83.38
0
Exon Skipping
72
chr4:108941366-108941437
-
37.75
100
0
Exon Skipping
45
chr4:108862501-108862545
-
36.07
100
0
Exon Skipping
45
chr4:108860927-108860971
-
85.38
55.01
0
Exon Skipping
81
chr4:108838098-108838178
-
78.18
46.39
0
Exon Skipping
36
chr4:108834355-108834390
-
67.18
92.18
0
Exon Skipping
54
chr4:108832380-108832433
-
95.03
12.92
0
Exon Skipping
54
chr4:108827135-108827188
-
95.93
11.96
0
Exon Skipping
27
chr4:108825196-108825222
-
67.52
71.07
0
Exon Skipping
87
chr4:108819812-108819898
-
80.14
95.96
0
Exon Skipping
78
chr4:108819252-108819329
-
12.93
98.04
0
Exon Skipping
83
chr4:108861651-108861733
-
4.37
34.84
0
Intron Retention
93
chr4:109302076-109302168
-
87.16
42.42
0
Intron Retention
5700
chr4:108863388-108869087
-
5.3
31.76
0
Intron Retention
4844
chr4:108819330-108824173
-
50.23
73.74
0



Orthologous genes[edit]

Organism Assembly Gene ID Gene Name Orthology Type

Mouse mm10 ENSMUSG00000058897 Col25a1 1-to-1
Mouse mm9 ENSMUSG00000058897 Col25a1 1-to-1
Rat rn6 ENSRNOG00000050706 Col25a1 1-to-1
Cow bosTau6 ENSBTAG00000017282 COL25A1 1-to-1
Chicken galGal4 ENSGALG00000010521 COL25A1 1-to-1
Chicken galGal3 ENSGALG00000010521 COL25A1 1-to-1
Zebrafish danRer10 ENSDARG00000009194 COL25A1 1-to-1
Fruitfly dm6 FBgn0259244 CG42342 8-to-1