GgaEX7003791 @ galGal4
Exon Skipping
Gene
ENSGALG00000010521 | COL25A1
Description
collagen, type XXV, alpha 1 [Source:HGNC Symbol;Acc:HGNC:18603]
Coordinates
chr4:37010718-37015563:+
Coord C1 exon
chr4:37010718-37010789
Coord A exon
chr4:37011664-37011771
Coord C2 exon
chr4:37015528-37015563
Length
108 bp
Sequences
Splice sites
3' ss Seq
TGATTTTTTTGTTGTGTTAGGGG
3' ss Score
6.8
5' ss Seq
CCGGTGAGT
5' ss Score
10.9
Exon sequences
Seq C1 exon
ATGGTGTTTCCTAAAATCAATCATGGGTTTCTCTCTGCTGATCAGCAGCTCATTAAACGCCGCCTCATTAAG
Seq A exon
GGGGACCAAGGACAAGCTGGACCCCCTGGGCCTCCAGGGCCACCAGGACCCAGAGGTCCCCCAGGAGATACTGGCAAAGATGGTCCTCGAGGGATGCCTGGCATTCCG
Seq C2 exon
GGTGAGCCAGGAAAGCCAGGTGAACAAGGGTTGGCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000010521-'12-8,'12-7,13-8=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=PU(0.1=0.0)
A:
PF0139113=Collagen=FE(56.5=100),PF0139113=Collagen=PU(17.6=41.7)
C2:
PF0139113=Collagen=FE(17.7=100),PF0139113=Collagen=FE(12.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TGGTGTTTCCTAAAATCAATCATGGG
R:
TGCCAACCCTTGTTCACCTG
Band lengths:
107-215
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]