BtaEX6105415 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000011741 | COL13A1
Description
Bos taurus collagen, type XIII, alpha 1 (COL13A1), mRNA. [Source:RefSeq mRNA;Acc:NM_001105433]
Coordinates
chr28:26344107-26353951:+
Coord C1 exon
chr28:26344107-26344133
Coord A exon
chr28:26350973-26351080
Coord C2 exon
chr28:26353925-26353951
Length
108 bp
Sequences
Splice sites
3' ss Seq
CTTGTTTCCACCAACCTCAGGGT
3' ss Score
6.47
5' ss Seq
CCAGTAAGT
5' ss Score
9.09
Exon sequences
Seq C1 exon
GGTCAGTGTGGCGAGTACCCACACCGG
Seq A exon
GGTGAACAGGGCCAGGCTGGCATCCAAGGCCCACCAGGGCCACCAGGCCCTCCCGGACCGAGTGGACCTCTGGGGCACCCAGGACTGCCAGGGCCCATGGGGCCACCA
Seq C2 exon
GGCTTACCTGGGCCTCCTGGACCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000011741-'12-17,'12-16,15-17=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=FE(13.3=100),PF0139113=Collagen=PU(7.7=55.6)
A:
PF0139113=Collagen=PD(3.4=5.6),PF0139113=Collagen=FE(43.2=100),PF0139113=Collagen=PU(15.5=30.6)
C2:
PF0139113=Collagen=FE(9.9=100),PF0139113=Collagen=FE(11.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]