MmuEX7004777 @ mm10
Exon Skipping
Gene
ENSMUSG00000058806 | Col13a1
Description
collagen, type XIII, alpha 1 [Source:MGI Symbol;Acc:MGI:1277201]
Coordinates
chr10:61860440-61863088:-
Coord C1 exon
chr10:61863044-61863088
Coord A exon
chr10:61862628-61862771
Coord C2 exon
chr10:61860440-61860484
Length
144 bp
Sequences
Splice sites
3' ss Seq
TATCATTGATGTTTCTATAGGGG
3' ss Score
7.22
5' ss Seq
CAGGTAAGT
5' ss Score
10.86
Exon sequences
Seq C1 exon
GGGGAGATTGGACTGCCAGGCCCTCCAGGACACGATGGGGACAAG
Seq A exon
GGGCCTCGAGGAAAACCAGGAGATATGGGGCCGGCTGGTCCTCAAGGACCCCCAGGAAAGGATGGGCCTCCAGGAATGAAGGGAGAAGTCGGACCCCCAGGAAGTCCAGGGGAGAAAGGGGAGACAGGACAAGCAGGCCCCCAG
Seq C2 exon
GGAGAGAAAGGAGAAGCTGGGGAGAAAGGCGACCCGGGAGCAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000058806-'38-36,'38-34,39-36=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=FE(25.0=100),PF0139113=Collagen=PU(9.0=50.0)
A:
PF0139113=Collagen=PD(36.7=45.8),PF0139113=Collagen=PU(71.0=91.7)
C2:
PF0139113=Collagen=FE(22.6=100),PF0139113=Collagen=PU(0.1=0.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GAGATTGGACTGCCAGGCC
R:
CTCCCGGGTCGCCTTTCTC
Band lengths:
82-226
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types