GgaEX0005705 @ galGal3
Exon Skipping
Gene
ENSGALG00000004286 | COL13A1
Description
NA
Coordinates
chr6:12132913-12134101:+
Coord C1 exon
chr6:12132913-12132957
Coord A exon
chr6:12133309-12133461
Coord C2 exon
chr6:12134003-12134101
Length
153 bp
Sequences
Splice sites
3' ss Seq
ACTGAGTGGATTTCTTTTAGGGA
3' ss Score
5.69
5' ss Seq
CCGGTGAGT
5' ss Score
10.9
Exon sequences
Seq C1 exon
GGTGAAATTGGCTTACCGGGTCCTCCAGGCCATGATGGAGAAAAG
Seq A exon
GGACCACGAGGCAAGCCAGGAGAAATGGGACCTCCTGGACCTCATGGACTGCCAGGAAGGGATGGACCACCTGGAATAAAGGGAGAGCCAGGCCAGATTGGGGTCGCAGGAGAAAAGGGGGATAAAGGAGAGCCAGGACAAGCAGGCTCACCG
Seq C2 exon
GGTCTTGATGGCCCCACTGGAGAGAAAGGAGAACGAGGTGACCAAGGGATGCCAGGACCACCAGGATTGCCGGGTCCCATTGGACTTCCAGGATTGACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004286-'29-30,'29-29,30-30
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=PD(15.0=17.6),PF0139113=Collagen=FE(63.3=100),PF0139113=Collagen=PU(21.4=35.3)
A:
PF0139113=Collagen=PD(40.0=47.1),PF0139113=Collagen=PU(68.1=92.2),PF0139113=Collagen=PU(3.6=5.9)
C2:
PF0139113=Collagen=PD(29.0=60.6),PF0139113=Collagen=FE(38.1=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTGAAATTGGCTTACCGGGT
R:
CAATCCTGGAAGTCCAATGGGA
Band lengths:
141-294
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]