GgaEX1016405 @ galGal4
Exon Skipping
Gene
ENSGALG00000026836 | COL16A1
Description
collagen, type XVI, alpha 1 [Source:HGNC Symbol;Acc:HGNC:2193]
Coordinates
chr23:4930294-4931281:-
Coord C1 exon
chr23:4931246-4931281
Coord A exon
chr23:4931139-4931174
Coord C2 exon
chr23:4930294-4930425
Length
36 bp
Sequences
Splice sites
3' ss Seq
CTCCTCTCTTTCCTTCCCAGGGA
3' ss Score
11.66
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
Exon sequences
Seq C1 exon
GACAGACCCGGCCCTGTGGGACCCAAAGGAGACAGG
Seq A exon
GGAGATCCCGGCATCAATGGGATCAAAGGGGAGAAG
Seq C2 exon
GGTGAGCCGTGTGGACAGTGTCCCTCAGCTCCACAGGCACTGGAAGGGGCAGCAACAACGGTGGCTGTGCCCGGAGCACCGGGACCACAGGGCAGGGATGGTCCCCCTGGCAGAGCAGTGAGTGCCCCCCAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000026836_MULTIEX1-11/20=10-13
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=FE(18.0=100)
A:
PF0139113=Collagen=FE(23.9=100)
C2:
PF0139113=Collagen=PD(25.8=38.6),PF0139113=Collagen=PU(3.3=4.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTGGGACCCAAAGGAGACAG
R:
ATCCCTGCCCTGTGGTCC
Band lengths:
121-157
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]