BtaEX6012369 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000010050 | COL16A1
Description
collagen, type XVI, alpha 1 [Source:HGNC Symbol;Acc:HGNC:2193]
Coordinates
chr2:122570782-122571270:+
Coord C1 exon
chr2:122570782-122570817
Coord A exon
chr2:122571049-122571084
Coord C2 exon
chr2:122571160-122571270
Length
36 bp
Sequences
Splice sites
3' ss Seq
TAAATCTCTTCTCCTTGCAGGGA
3' ss Score
11.36
5' ss Seq
AAGGTGAGG
5' ss Score
9.16
Exon sequences
Seq C1 exon
GAGAGTCTGGGAGCTGTTGGACAAAAAGGTGATCGG
Seq A exon
GGAGACCCTGGCATCCAAGGCCTCAAAGGAGAGAAG
Seq C2 exon
GGGGAGTCCTGCTCGTCCTGCAGCTTTGCCGTAGCGGCCCAGCATCTCCAGCCTTCTGCAGGGGCCAAAGGCGATGTGGGCCCTCCTGGCCTGGGTTTGCCAGGTCTTCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000010050-'31-35,'31-34,32-35=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=0.919
Domain overlap (PFAM):
C1:
PF0139113=Collagen=FE(18.6=100)
A:
PF0139113=Collagen=FE(23.4=100)
C2:
PF0139113=Collagen=PD(12.8=16.2),PF0139113=Collagen=PU(25.7=48.6)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGAGTCTGGGAGCTGTTGGA
R:
GGCCCACATCGCCTTTGG
Band lengths:
118-154
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]