GgaEX6047712 @ galGal3
Exon Skipping
Description
NA
Coordinates
chrUn_random:29708706-29709050:+
Coord C1 exon
chrUn_random:29708706-29708742
Coord A exon
chrUn_random:29708816-29708851
Coord C2 exon
chrUn_random:29708961-29709050
Length
36 bp
Sequences
Splice sites
3' ss Seq
CTCCTCTCTTTCCTTCTCAGGGA
3' ss Score
11.98
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
Exon sequences
Seq C1 exon
GACAGACCCGGCCTCTGTGGGACCCAAAGGAGACAGG
Seq A exon
GGAGATCCCGGCATCAATGGGATCAAAGGGGAGAAG
Seq C2 exon
GGGGACTCCTGCCTGTCCTGTGACAGCCGTGTCCTCGCTGCGCTGCTGCGGGAACTCCCCGAGGGGCGTGAGAGCGAACTGGGATCACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000022292-'9-10,'9-9,10-10=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=0.533
Domain overlap (PFAM):
C1:
PF0139113=Collagen=PU(36.7=84.6)
A:
PF0139113=Collagen=FE(36.7=100)
C2:
PF0139113=Collagen=PD(16.7=16.7),PF0139113=Collagen=PU(11.3=26.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCTGTGGGACCCAAAGGAGA
R:
AGTGATCCCAGTTCGCTCTCA
Band lengths:
114-150
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]