GgaEX6047713 @ galGal3
Exon Skipping
Description
NA
Coordinates
chrUn_random:29708498-29708851:+
Coord C1 exon
chrUn_random:29708498-29708616
Coord A exon
chrUn_random:29708706-29708742
Coord C2 exon
chrUn_random:29708816-29708851
Length
37 bp
Sequences
Splice sites
3' ss Seq
TCCCATCTCTCCATCTCCAGGAC
3' ss Score
11.78
5' ss Seq
AGGGTAGTG
5' ss Score
0.91
Exon sequences
Seq C1 exon
AGGGTGAGCCGTGCCAGCCGTGCCCCGCTCTGCCCACGGGGATGCTCAGCACTGCGGTGCTTCCTGGAAAGCCCGGACCCAGGGGGGAGCCCGGGACACCTGGCAGGGATGGAGTGTCG
Seq A exon
GACAGACCCGGCCTCTGTGGGACCCAAAGGAGACAGG
Seq C2 exon
GGAGATCCCGGCATCAATGGGATCAAAGGGGAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000022292-'8-9,'8-8,9-9=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
PF0139113=Collagen=PU(36.7=84.6)
C2:
PF0139113=Collagen=FE(36.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACGGGGATGCTCAGCAC
R:
TTTGATCCCATTGATGCCGGG
Band lengths:
112-149
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]