GgaEX1016406 @ galGal4
Exon Skipping
Gene
ENSGALG00000026836 | COL16A1
Description
collagen, type XVI, alpha 1 [Source:HGNC Symbol;Acc:HGNC:2193]
Coordinates
chr23:4929317-4931174:-
Coord C1 exon
chr23:4931139-4931174
Coord A exon
chr23:4930940-4931029
Coord C2 exon
chr23:4929317-4929352
Length
90 bp
Sequences
Splice sites
3' ss Seq
GCCCCCCATGCCCCCCGCAGGGG
3' ss Score
9.17
5' ss Seq
CTGGTGAGT
5' ss Score
10.1
Exon sequences
Seq C1 exon
GGAGATCCCGGCATCAATGGGATCAAAGGGGAGAAG
Seq A exon
GGGGACTCCTGCCTGTCCTGTGACAGCCGTGTCCTCGCTGCGCTGCTGCGGGAACTCCCCGAGGGGCGTGAGAGCGAACTGGGATCACTG
Seq C2 exon
GGAGAGCCCGGGAGCACCGGACAGCCCGGGACCCCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000026836_MULTIEX1-12/20=11-19
Average complexity
C1*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.567 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=FE(23.9=100)
A:
PF0139113=Collagen=PD(8.7=13.3),PF0139113=Collagen=PU(3.0=6.7)
C2:
PF0139113=Collagen=FE(19.6=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]