GgaEX1016400 @ galGal4
Exon Skipping
Gene
ENSGALG00000026836 | COL16A1
Description
collagen, type XVI, alpha 1 [Source:HGNC Symbol;Acc:HGNC:2193]
Coordinates
chr23:4927160-4927806:-
Coord C1 exon
chr23:4927690-4927806
Coord A exon
chr23:4927357-4927392
Coord C2 exon
chr23:4927160-4927240
Length
36 bp
Sequences
Splice sites
3' ss Seq
GACTCTGGGTTTTCTTGCAGTGC
3' ss Score
7.87
5' ss Seq
CGGGTGAGT
5' ss Score
9.89
Exon sequences
Seq C1 exon
AACATCTGCGGGGACTGCGCCCACCTGCAGGCGGCCTTTGAAGCACCCAGAAGCTTCAAGGGGGAAAAGGGAGACCAAGGCATGCCAGGAGCCCCCGGCAACGAGGGTTGTGCACGT
Seq A exon
TGCTTTGCCCAGTTCCCAAGAGCTGAGGAGGCTCGG
Seq C2 exon
GGTGACAGCCCGGACGCAGACTGTGCGGGTGACCCTGGGCTCCCTGGCACCCCAGGTGTCCCGGGTGAGAGAGGCGAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000026836_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.692 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0139113=Collagen=PU(31.7=74.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTTTGAAGCACCCAGAAGCT
R:
GTCACCCGCACAGTCTGC
Band lengths:
116-152
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]