BtaEX6012352 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000010050 | COL16A1
Description
collagen, type XVI, alpha 1 [Source:HGNC Symbol;Acc:HGNC:2193]
Coordinates
chr2:122590492-122590925:+
Coord C1 exon
chr2:122590492-122590608
Coord A exon
chr2:122590716-122590757
Coord C2 exon
chr2:122590839-122590925
Length
42 bp
Sequences
Splice sites
3' ss Seq
CCTCCGGCTGTCATCCACAGTGC
3' ss Score
8.56
5' ss Seq
CGGGTGAGT
5' ss Score
9.89
Exon sequences
Seq C1 exon
AGCATCTGCGGGGACTGTATCCAGGGCAAGATGGCTCACGAGGTGGCCCTCATGGAAAGCGGAGAGAAGGGAGACCAGGGCATCCCCGGCGTGCCAGGCCTCGACAGTTGCACCCAG
Seq A exon
TGCTTCATGGAGCGGGAGCGCCCGAGAGCCGAGGAGGCCCGG
Seq C2 exon
GGGGACAACCATGAGGGAGACCCGGGCTGTGCAGGGAGCCCCGGGCTGCCGGGACCTCCGGGACTGCCTGGCCAGAGAGGAGAAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000010050-'59-61,'59-60,60-61=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.692 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0139113=Collagen=PU(45.0=93.1)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAAAGCGGAGAGAAGGGAGA
R:
TTCTCCTCTCTGGCCAGGC
Band lengths:
148-190
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]