DreEX0002991 @ danRer10
Exon Skipping
Gene
ENSDARG00000009194 | COL25A1
Description
collagen, type XXV, alpha 1 [Source:HGNC Symbol;Acc:HGNC:18603]
Coordinates
chr19:38918621-38921283:-
Coord C1 exon
chr19:38921167-38921283
Coord A exon
chr19:38920930-38920968
Coord C2 exon
chr19:38918621-38918698
Length
39 bp
Sequences
Splice sites
3' ss Seq
GTGTTTGATCACCTTCACAGTGT
3' ss Score
6.56
5' ss Seq
CCTGTAAGT
5' ss Score
7.52
Exon sequences
Seq C1 exon
GAAGGCTGTGGCGATTGTTCCAAGGGTCTACCAGGTGTGCCTGGCACGGTTGGTGCAAAGGGCGAGAAGGGAGATCAGGGCAAACCTGGCGTTGTGCCCTTGGAAGGATGCGAACGG
Seq A exon
TGTTTTGAGCTGCAGAGAGAGGAAACACCAAGCGGACCT
Seq C2 exon
ACGGGTAACAGCGGTCCGTGTGTTGGCACACCGGGGGCACCTGGATTCCCAGGACAACCAGGAGTTAAAGGAGAGCCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000009194_MULTIEX1-2/2=1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.901 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=PD(81.8=92.3)
A:
PF0139113=Collagen=PU(9.5=46.2)
C2:
PF0139113=Collagen=FE(39.7=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAAGGGCGAGAAGGGAGATCA
R:
CCTGGTTGTCCTGGGAATCCA
Band lengths:
123-162
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]