RnoEX0022904 @ rn6
Exon Skipping
Gene
ENSRNOG00000031475 | Col16a1
Description
collagen type XVI alpha 1 chain [Source:RGD Symbol;Acc:1310982]
Coordinates
chr5:148271922-148275587:+
Coord C1 exon
chr5:148271922-148272032
Coord A exon
chr5:148272267-148272311
Coord C2 exon
chr5:148275552-148275587
Length
45 bp
Sequences
Splice sites
3' ss Seq
GGGTTTTGTTTCGTTTTAAGGGC
3' ss Score
9.1
5' ss Seq
AAGGTGAGG
5' ss Score
9.16
Exon sequences
Seq C1 exon
GGGGAACCCTGCTCATCCTGCAGTTCAGGTGTTGGGGCCCAGCATCTTGGGCCCTCCACTGGGGTCAATGAAGACATGGGCTCCCCTGTCCATGGTTTACCTGGCCTTCCG
Seq A exon
GGCAAACCTGGAATTCCCGGGCCAAGAGGCATGAAAGGAGAGAAG
Seq C2 exon
GGTAGTTTTGGCGATGCTGGGCCGGCTGGAGTTGCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000031475_CASSETTE4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=PD(24.5=35.1),PF0139113=Collagen=PU(13.3=21.6)
A:
PF0139113=Collagen=FE(23.3=100)
C2:
PF0139113=Collagen=FE(18.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAACCCTGCTCATCCTGCA
R:
GGCCCAGCATCGCCAAAA
Band lengths:
132-177
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]