BtaEX0009601 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000010050 | COL16A1
Description
collagen, type XVI, alpha 1 [Source:HGNC Symbol;Acc:HGNC:2193]
Coordinates
chr2:122571160-122573563:+
Coord C1 exon
chr2:122571160-122571270
Coord A exon
chr2:122571631-122571675
Coord C2 exon
chr2:122573528-122573563
Length
45 bp
Sequences
Splice sites
3' ss Seq
TGACTTGATTATTTTTTCAGGGG
3' ss Score
7.41
5' ss Seq
AAGGTGAGA
5' ss Score
8.68
Exon sequences
Seq C1 exon
GGGGAGTCCTGCTCGTCCTGCAGCTTTGCCGTAGCGGCCCAGCATCTCCAGCCTTCTGCAGGGGCCAAAGGCGATGTGGGCCCTCCTGGCCTGGGTTTGCCAGGTCTTCCG
Seq A exon
GGGAAAGCTGGGGCCCCAGGGCCAACAGGGCTGAAAGGAGAAAAG
Seq C2 exon
GGTAATTTCGGGGAGGTAGGGCCAGCCGGCAATCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000010050_MULTIEX1-1/3=C1-3
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.919 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=PD(12.8=16.2),PF0139113=Collagen=PU(25.7=48.6)
A:
PF0139113=Collagen=FE(20.0=100)
C2:
PF0139113=Collagen=FE(15.7=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGAGTCCTGCTCGTCCTG
R:
GGCCCTACCTCCCCGAAATTA
Band lengths:
133-178
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development