HsaEX0016345 @ hg19
Exon Skipping
Gene
ENSG00000084636 | COL16A1
Description
collagen, type XVI, alpha 1 [Source:HGNC Symbol;Acc:2193]
Coordinates
chr1:32151845-32154572:-
Coord C1 exon
chr1:32154462-32154572
Coord A exon
chr1:32154068-32154103
Coord C2 exon
chr1:32151845-32151880
Length
36 bp
Sequences
Splice sites
3' ss Seq
CTGTCTTGGTTGTTTTTCAGGGT
3' ss Score
10.77
5' ss Seq
AAGGTGAGA
5' ss Score
8.68
Exon sequences
Seq C1 exon
GGGGAGCCCTGCTTGTCCTGCAGCTCGGTTGTAGGGGCCCAGCATCTTGTGTCCTCCACAGGGGCCAGTGGAGATGTGGGTTCCCCTGGCTTTGGTCTGCCTGGCCTTCCG
Seq A exon
GGTAGAGCTGGGGTTCCAGGGCTGAAAGGAGAGAAG
Seq C2 exon
GGTAACTTCGGGGAGGCAGGGCCAGCTGGCAGTCCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000084636_CASSETTE4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.723 A=0.861 C2=0.984
Domain overlap (PFAM):
C1:
PF0139113=Collagen=PD(12.2=16.2),PF0139113=Collagen=PU(25.4=43.2)
A:
PF0139113=Collagen=FE(17.5=100)
C2:
PF0139113=Collagen=FE(16.4=100)
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGTCCTGCAGCTCGGTTGTA
R:
CCCTGCCTCCCCGAAGTTA
Band lengths:
120-156
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)