Special

ENSGALG00000005811 @ galGal4

Biotype
protein_coding
Gene Symbol
COL7A1
Description
collagen, type VII, alpha 1 [Source:HGNC Symbol;Acc:HGNC:2214]
Coordinates
chr12:9064405-9086938:+
Assembly
Other assemblies

GENOMIC BROWSER[edit]


EXPRESSION VALUES[edit]



EVENTS AND AS PROFILES[edit]

Associated events[edit]

Event
Type
Length
Coordinates
Strand
PSI Average
PSI Range
Annotated Functions
Alternative 3'ss
0
NA
+
24.97
20.13
0
Alternative 3'ss
3
chr12:9068859-9068861
+
75.03
20.13
0
Alternative 3'ss
0
NA
+
17.07
33.81
0
Alternative 3'ss
3
chr12:9067992-9067994
+
82.93
33.81
0
Alternative 5'ss
0
NA
+
83.6
77.46
0
Alternative 5'ss
11
chr12:9078809-9078819
+
15.93
77.46
0
Exon Skipping
36
chr12:9074418-9074453
+
78.05
45.4
0
Exon Skipping
36
chr12:9079691-9079726
+
11.1
64.89
0
Exon Skipping
45
chr12:9073178-9073222
+
75.79
29.62
0
Exon Skipping
36
chr12:9073318-9073353
+
75.63
30.07
0
Exon Skipping
36
chr12:9073423-9073458
+
75.36
33.85
0
Exon Skipping
33
chr12:9073547-9073579
+
62.48
10.72
0
Exon Skipping
73
chr12:9073749-9073821
+
61.7
20.34
0
Exon Skipping
60
chr12:9073933-9073992
+
77.9
40.14
0
Exon Skipping
36
chr12:9074078-9074113
+
76.22
34.16
0
Exon Skipping
81
chr12:9074219-9074299
+
77.05
34.62
0
Exon Skipping
45
chr12:9074524-9074568
+
79.44
48.82
0
Exon Skipping
70
chr12:9074657-9074726
+
68.24
8.58
0
Exon Skipping
45
chr12:9074846-9074890
+
71.91
6.84
0
Exon Skipping
27
chr12:9074980-9075006
+
80.58
34.85
0
Exon Skipping
42
chr12:9075078-9075119
+
71.64
48.08
0
Exon Skipping
81
chr12:9075205-9075285
+
76.23
45.85
0
Exon Skipping
36
chr12:9075367-9075402
+
77.71
31.2
0
Exon Skipping
36
chr12:9075481-9075516
+
73.74
34.85
0
Exon Skipping
81
chr12:9075593-9075673
+
75.91
43.28
0
Exon Skipping
36
chr12:9075799-9075834
+
72.23
50
0
Exon Skipping
72
chr12:9076022-9076093
+
78.04
42.74
0
Exon Skipping
45
chr12:9076258-9076302
+
84.19
36.46
0
Exon Skipping
36
chr12:9076479-9076514
+
81.53
44.77
0
Exon Skipping
36
chr12:9076610-9076645
+
84.47
33.91
0
Exon Skipping
105
chr12:9076734-9076838
+
85.53
30.28
0
Exon Skipping
36
chr12:9076923-9076958
+
82.9
39.87
0
Exon Skipping
36
chr12:9077087-9077122
+
79.35
44
0
Exon Skipping
39
chr12:9077273-9077311
+
80.84
31.84
0
Exon Skipping
45
chr12:9078764-9078808
+
88.83
29.85
0
Exon Skipping
63
chr12:9079065-9079127
+
85.19
35.93
0
Exon Skipping
45
chr12:9079524-9079568
+
76.9
42.22
0
Exon Skipping
45
chr12:9080186-9080230
+
81.6
37.62
0
Exon Skipping
33
chr12:9080445-9080477
+
79.11
48.01
0
Exon Skipping
63
chr12:9080587-9080649
+
81.88
38.46
0
Exon Skipping
36
chr12:9080735-9080770
+
84.69
30.97
0
Exon Skipping
81
chr12:9080878-9080958
+
75.61
19.37
0
Exon Skipping
45
chr12:9081457-9081501
+
90.24
27.65
0
Exon Skipping
45
chr12:9081606-9081650
+
91.83
24.01
0
Exon Skipping
36
chr12:9081727-9081762
+
91.89
26.37
0
Exon Skipping
60
chr12:9081843-9081902
+
92.58
21.14
0
Exon Skipping
126
chr12:9081998-9082123
+
93.61
15.19
0
Exon Skipping
72
chr12:9082212-9082283
+
92.86
16.12
0
Exon Skipping
60
chr12:9072560-9072619
+
81.52
46.16
0
Exon Skipping
36
chr12:9072699-9072734
+
84.97
40.99
0
Intron Retention
80
chr12:9065126-9065205
+
4.25
97.22
0
Intron Retention
102
chr12:9065300-9065401
+
3.53
95.87
0
Intron Retention
85
chr12:9067249-9067333
+
4.64
89.47
0
Intron Retention
70
chr12:9067696-9067765
+
4.25
100
0
Intron Retention
110
chr12:9069847-9069956
+
2.94
80.93
0
Intron Retention
96
chr12:9070118-9070213
+
3.16
100
0
Intron Retention
183
chr12:9070564-9070746
+
5.3
100
0
Intron Retention
123
chr12:9070840-9070962
+
5.02
100
0
Intron Retention
336
chr12:9079727-9080062
+
8.68
24.61
0
Intron Retention
223
chr12:9064478-9064700
+
5.07
100
0
Intron Retention
82
chr12:9067910-9067991
+
6.02
97.68
0
Intron Retention
71
chr12:9068118-9068188
+
6.92
96.8
0
Intron Retention
84
chr12:9064882-9064965
+
3.55
97.72
0
Intron Retention
187
chr12:9075835-9076021
+
14.48
45.85
0



Orthologous genes[edit]

Organism Assembly Gene ID Gene Name Orthology Type

Human hg38 ENSG00000114270 COL7A1 1-to-1
Human hg19 ENSG00000114270 COL7A1 1-to-1
Mouse mm10 ENSMUSG00000025650 Col7a1 1-to-1
Mouse mm9 ENSMUSG00000025650 Col7a1 1-to-1
Rat rn6 ENSRNOG00000020579 Col7a1 1-to-1
Cow bosTau6 ENSBTAG00000019081 COL7A1 1-to-1
Zebrafish danRer10 ENSDARG00000021720 col7a1 1-to-1
Fruitfly dm6 FBgn0035798 frac 9-to-1