GgaEX1016991 @ galGal4
Exon Skipping
Gene
ENSGALG00000005811 | COL7A1
Description
collagen, type VII, alpha 1 [Source:HGNC Symbol;Acc:HGNC:2214]
Coordinates
chr12:9081457-9082463:+
Coord C1 exon
chr12:9081457-9081501
Coord A exon
chr12:9081606-9081650
Coord C2 exon
chr12:9082428-9082463
Length
45 bp
Sequences
Splice sites
3' ss Seq
TGCTTCTGTCCTCCTGCCAGGGG
3' ss Score
9.6
5' ss Seq
GATGTGAGT
5' ss Score
7.77
Exon sequences
Seq C1 exon
GGCTCCAAAGGTGCCCGAGGTTTGCCCGGCCCCAAGGGTGAGAAG
Seq A exon
GGGGAGCCTGGAGGAGCTGGGGAGCCTGGAGACCCCGGCGAAGAT
Seq C2 exon
GGCATACAAGGGGCCTCGGGGCTGAAGGGTGACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005811_MULTIEX2-58/78=57-63
Average complexity
C3
Mappability confidence:
88%=91=96%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=FE(26.9=100)
A:
PF0139113=Collagen=FE(26.9=100)
C2:
PF0139113=Collagen=FE(18.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAAAGGTGCCCGAGGTTTG
R:
CTTGTCACCCTTCAGCCCC
Band lengths:
77-122
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]