BtaEX6095645 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000019081 | COL7A1
Description
collagen, type VII, alpha 1 [Source:HGNC Symbol;Acc:HGNC:2214]
Coordinates
chr22:51881834-51882617:+
Coord C1 exon
chr22:51881834-51881878
Coord A exon
chr22:51881974-51882018
Coord C2 exon
chr22:51882582-51882617
Length
45 bp
Sequences
Splice sites
3' ss Seq
TCACCCCACTGTCTATGCAGGGT
3' ss Score
8.86
5' ss Seq
GATGTGAGT
5' ss Score
7.77
Exon sequences
Seq C1 exon
GGAGCCAAGGGTGACCGAGGACTGCCAGGGCCGCGGGGCGAGAAG
Seq A exon
GGTGAAGCTGGCCGTGCGGGGGAGCCTGGAGACCCTGGCGAAGAT
Seq C2 exon
GGTCAGAAGGGGGCTCCGGGACCCAAAGGTCACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000019081-'93-96,'93-95,94-96=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=FE(26.4=100)
A:
PF0139113=Collagen=FE(26.4=100)
C2:
PF0139113=Collagen=FE(20.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGACCGAGGACTGCCAGG
R:
ACCTTTGGGTCCCGGAGC
Band lengths:
64-109
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]