HsaEX0016662 @ hg19
Exon Skipping
Gene
ENSG00000114270 | COL7A1
Description
collagen, type VII, alpha 1 [Source:HGNC Symbol;Acc:2214]
Coordinates
chr3:48608676-48609604:-
Coord C1 exon
chr3:48609560-48609604
Coord A exon
chr3:48609434-48609478
Coord C2 exon
chr3:48608676-48608711
Length
45 bp
Sequences
Splice sites
3' ss Seq
TCACCTGCCATTCTGTGCAGGGT
3' ss Score
9
5' ss Seq
GATGTGAGT
5' ss Score
7.77
Exon sequences
Seq C1 exon
GGAGCCAAAGGTGACCGAGGACTGCCAGGGCCGCGAGGCGAGAAG
Seq A exon
GGTGAAGCTGGCCGTGCAGGGGAGCCCGGAGACCCTGGGGAAGAT
Seq C2 exon
GGTCAGAAAGGGGCTCCAGGACCCAAAGGTTTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000114270-'91-96,'91-93,92-96
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=FE(24.1=100)
A:
PF0139113=Collagen=FE(24.1=100)
C2:
PF0139113=Collagen=FE(19.0=100)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGCCAAAGGTGACCGAGGA
R:
GAAACCTTTGGGTCCTGGAGC
Band lengths:
77-122
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)