MmuEX6069072 @ mm10
Exon Skipping
Gene
ENSMUSG00000025650 | Col7a1
Description
collagen, type VII, alpha 1 [Source:MGI Symbol;Acc:MGI:88462]
Coordinates
chr9:108976037-108977115:+
Coord C1 exon
chr9:108976037-108976081
Coord A exon
chr9:108976171-108976215
Coord C2 exon
chr9:108977080-108977115
Length
45 bp
Sequences
Splice sites
3' ss Seq
TGACCATCCTCTATGTGCAGGGT
3' ss Score
8.36
5' ss Seq
GATGTAAGT
5' ss Score
9.11
Exon sequences
Seq C1 exon
GGAGCCAAAGGTGACCGAGGACTGCCTGGACCACGGGGTGAAAAG
Seq A exon
GGTGAAGCTGGCCGTGCAGGAGGACCTGGGGACCCTGGGGAAGAT
Seq C2 exon
GGTCAAAAAGGGGCTCCAGGACTCAAAGGTCTTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000025650-'92-124,'92-113,103-124=AN
Average complexity
A_S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=FE(26.4=100)
A:
PF0139113=Collagen=FE(26.4=100)
C2:
PF0139113=Collagen=FE(20.8=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGCCAAAGGTGACCGAGGA
R:
AGACCTTTGAGTCCTGGAGCC
Band lengths:
76-121
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types