Special

ENSBTAG00000019081 @ bosTau6

Biotype
protein_coding
Gene Symbol
COL7A1
Description
collagen, type VII, alpha 1 [Source:HGNC Symbol;Acc:HGNC:2214]
Coordinates
chr22:51859652-51889946:+
Assembly

GENOMIC BROWSER[edit]


EXPRESSION VALUES[edit]


SPECIAL DATASETS

  • Pre-implantation embryo development

EVENTS AND AS PROFILES[edit]

Associated events[edit]

Event
Type
Length
Coordinates
Strand
PSI Average
PSI Range
Annotated Functions
Intron Retention
248
chr22:51885927-51886174
+
6.03
63.35
0
Intron Retention
74
chr22:51886368-51886441
+
4.11
83.57
0
Intron Retention
640
chr22:51863293-51863932
+
10.54
92.86
0
Intron Retention
91
chr22:51864077-51864167
+
12.61
100
0
Intron Retention
656
chr22:51860390-51861045
+
13.45
100
0
Intron Retention
172
chr22:51861638-51861809
+
15.49
100
0
Intron Retention
193
chr22:51873837-51874029
+
10.95
87.19
0
Intron Retention
73
chr22:51877201-51877273
+
6.68
91.46
0
Intron Retention
321
chr22:51877942-51878262
+
17.95
39.63
0
Intron Retention
303
chr22:51879828-51880130
+
8.07
68.9
0
Intron Retention
142
chr22:51881383-51881524
+
4.87
82.49
0
Intron Retention
563
chr22:51882019-51882581
+
8.38
94.81
0
Intron Retention
99
chr22:51883261-51883359
+
2.37
50.09
0



Orthologous genes[edit]

Organism Assembly Gene ID Gene Name Orthology Type

Human hg38 ENSG00000114270 COL7A1 1-to-1
Human hg19 ENSG00000114270 COL7A1 1-to-1
Mouse mm10 ENSMUSG00000025650 Col7a1 1-to-1
Mouse mm9 ENSMUSG00000025650 Col7a1 1-to-1
Rat rn6 ENSRNOG00000020579 Col7a1 1-to-1
Chicken galGal4 ENSGALG00000005811 COL7A1 1-to-1
Chicken galGal3 ENSGALG00000005811 COL7A1 1-to-1
Zebrafish danRer10 ENSDARG00000021720 col7a1 1-to-1
Fruitfly dm6 FBgn0035798 frac 9-to-1