Special

FBgn0035798 @ dm6

Biotype
protein_coding
Gene Symbol
frac
Description
The gene faulty attraction is referred to in FlyBase by the symbol Dmelfrac (CG7526, FBgn0035798). It is a protein_coding_gene from Dmel. It has 6 annotated transcripts and 6 polypeptides (2 unique). Gene sequence location is 3L:7562610..7569499. Its molecular function is described by: calcium ion binding. It is involved in the biological process described with: axon target recognition. 11 alleles are reported. The phenotypes of these alleles manifest in: segmental nerve branch SNa of A1-7; intersegmental nerve branch ISNb of A1-7. The phenotypic classes of alleles include: fertile; neuroanatomy defective; viable. Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of high expression to a trough of very low expression. Peak expression observed within 12-18 embryonic stages.
Coordinates
chr3L:7562610-7569499:+
Assembly

GENOMIC BROWSER[edit]


EXPRESSION VALUES[edit]


SPECIAL DATASETS

  • Neural diversity
  • Neurogenesis
  • Neuronal activity
  • Splicing factor regulation (brain)
  • Splicing factor regulation (SL2)

EVENTS AND AS PROFILES[edit]

Associated events[edit]

Event
Type
Length
Coordinates
Strand
PSI Average
PSI Range
Annotated Functions
Alternative 5'ss
0
NA
+
81.7
34.92
0
Alternative 5'ss
53
chr3L:7562640-7562692
+
15.99
30.47
0
Intron Retention
369
chr3L:7562640-7563008
+
8.68
25.1
0



Orthologous genes[edit]

Organism Assembly Gene ID Gene Name Orthology Type

Human hg38 ENSG00000100473 COCH 1-to-10
Human hg38 ENSG00000111799 COL12A1 1-to-10
Human hg38 ENSG00000114270 COL7A1 1-to-10
Human hg38 ENSG00000172752 COL6A5 1-to-10
Human hg38 ENSG00000205221 VIT 1-to-10
Human hg19 ENSG00000100473 COCH 1-to-10
Human hg19 ENSG00000111799 COL12A1 1-to-10
Human hg19 ENSG00000114270 COL7A1 1-to-10
Human hg19 ENSG00000172752 COL29A1 1-to-10
Human hg19 ENSG00000205221 VIT 1-to-10
Mouse mm10 ENSMUSG00000016356 Col20a1 1-to-11
Mouse mm10 ENSMUSG00000020953 Coch 1-to-11
Mouse mm10 ENSMUSG00000022371 Col14a1 1-to-11
Mouse mm10 ENSMUSG00000032332 Col12a1 1-to-11
Mouse mm10 ENSMUSG00000043719 Col6a6 1-to-11
Mouse mm9 ENSMUSG00000016356 Col20a1 1-to-11
Mouse mm9 ENSMUSG00000020953 Coch 1-to-11
Mouse mm9 ENSMUSG00000022371 Col14a1 1-to-11
Mouse mm9 ENSMUSG00000032332 Col12a1 1-to-11
Mouse mm9 ENSMUSG00000043719 Col6a6 1-to-11
Cow bosTau6 ENSBTAG00000004582 COL20A1 1-to-9
Cow bosTau6 ENSBTAG00000006860 VWA2 1-to-9
Cow bosTau6 ENSBTAG00000012837 COL6A6 1-to-9
Cow bosTau6 ENSBTAG00000024980 VIT 1-to-9
Cow bosTau6 ENSBTAG00000030190 COL6A3 1-to-9
Chicken galGal4 ENSGALG00000003923 COL6A3 1-to-9
Chicken galGal4 ENSGALG00000005797 COL20A1 1-to-9
Chicken galGal4 ENSGALG00000009920 Protein 1-to-9
Chicken galGal3 ENSGALG00000003923 COL6A3 1-to-9
Chicken galGal3 ENSGALG00000005797 COL20A1 1-to-9
Chicken galGal3 ENSGALG00000009920 COCH_CHICK 1-to-9
Zebrafish danRer10 ENSDARG00000021720 col7a1 1-to-13
Zebrafish danRer10 ENSDARG00000063631 ch1073-291c23.1 1-to-13
Zebrafish danRer10 ENSDARG00000077139 col6a3 1-to-13
Zebrafish danRer10 ENSDARG00000079752 col6a6 1-to-13
Zebrafish danRer10 ENSDARG00000095915 col6a3 1-to-13