Special

ENSG00000111799 @ hg19

Biotype
protein_coding
Gene Symbol
COL12A1
Description
collagen, type XII, alpha 1 [Source:HGNC Symbol;Acc:2188]
Coordinates
chr6:75794042-75915767:-
Assembly
Other assemblies

GENOMIC BROWSER[edit]


EXPRESSION VALUES[edit]


SPECIAL DATASETS

  • The Cancer Genome Atlas (TCGA)
  • Genotype-Tissue Expression Project (GTEx)
  • Autistic and control brains
  • Pre-implantation embryo development

EVENTS AND AS PROFILES[edit]

Associated events[edit]

Event
Type
Length
Coordinates
Strand
PSI Average
PSI Range
Annotated Functions
Exon Skipping
140
chr6:75831018-75831157
-
99.41
26.25
0
Exon Skipping
117
chr6:75904547-75904663
-
63.11
91.45
0
Exon Skipping
273
chr6:75887379-75887651
-
79.55
81.85
0
Exon Skipping
273
chr6:75884754-75885026
-
52.07
89
0
Exon Skipping
273
chr6:75875223-75875495
-
82.56
76.34
0
Exon Skipping
267
chr6:75865973-75866239
-
81.98
77.74
0
Exon Skipping
193
chr6:75865378-75865570
-
78.82
86.92
0
Exon Skipping
122
chr6:75864132-75864253
-
79.12
84.89
0
Exon Skipping
144
chr6:75901928-75902071
-
68.85
92.51
0
Exon Skipping
60
chr6:75901417-75901476
-
74.27
89.41
0
Exon Skipping
264
chr6:75899268-75899531
-
78.12
85.86
0
Exon Skipping
165
chr6:75898933-75899097
-
78.66
83.74
0
Exon Skipping
174
chr6:75898078-75898251
-
79.6
80.99
0
Exon Skipping
291
chr6:75893570-75893860
-
79.97
84
0
Exon Skipping
603
chr6:75892766-75893368
-
79.78
80.95
0
Exon Skipping
273
chr6:75890655-75890927
-
80.68
78.84
0
Intron Retention
7772
chr6:75904664-75912435
-
7.8
79.99
0



Orthologous genes[edit]

Organism Assembly Gene ID Gene Name Orthology Type

Mouse mm10 ENSMUSG00000032332 Col12a1 1-to-1
Mouse mm9 ENSMUSG00000032332 Col12a1 1-to-1
Rat rn6 ENSRNOG00000058470 Col12a1 1-to-1
Cow bosTau6 ENSBTAG00000020056 COL12A1 1-to-1
Chicken galGal4 ENSGALG00000015908 COL12A1 1-to-1
Zebrafish danRer10 ENSDARG00000019601 col12a1b 1-to-2
Zebrafish danRer10 ENSDARG00000078322 col12a1a 1-to-2
Fruitfly dm6 FBgn0035798 frac 10-to-1