Special

ENSDARG00000019601 @ danRer10

Biotype
protein_coding
Gene Symbol
col12a1b
Description
collagen, type XII, alpha 1b [Source:ZFIN;Acc:ZDB-GENE-120215-116]
Coordinates
chr20:49647131-49880731:-
Assembly

GENOMIC BROWSER[edit]


EXPRESSION VALUES[edit]



EVENTS AND AS PROFILES[edit]

Associated events[edit]

Event
Type
Length
Coordinates
Strand
PSI Average
PSI Range
Annotated Functions
Alternative 5'ss
0
NA
-
11.76
29.17
0
Alternative 5'ss
20
chr20:49814897-49814916
-
88.24
29.17
0
Exon Skipping
21
chr20:49771545-49771565
-
12.46
46.12
0
Exon Skipping
117
chr20:49869021-49869137
-
64.97
90.92
0
Exon Skipping
276
chr20:49846687-49846962
-
73.11
84.84
0
Exon Skipping
273
chr20:49840156-49840428
-
73.13
86.72
0
Exon Skipping
270
chr20:49822713-49822982
-
74.88
83.93
0
Exon Skipping
267
chr20:49814897-49815163
-
77.44
81.93
0
Exon Skipping
193
chr20:49811581-49811773
-
77.19
80.36
0
Exon Skipping
125
chr20:49811348-49811472
-
74.09
84.42
0
Exon Skipping
144
chr20:49865406-49865549
-
70.01
85.44
0
Exon Skipping
57
chr20:49864965-49865021
-
73.13
85.27
0
Exon Skipping
264
chr20:49861712-49861975
-
73.74
87.92
0
Exon Skipping
165
chr20:49857451-49857615
-
75.18
85.01
0
Exon Skipping
174
chr20:49857150-49857323
-
76.18
85.01
0
Exon Skipping
291
chr20:49856763-49857053
-
73.89
90.92
0
Exon Skipping
603
chr20:49852863-49853465
-
71.44
92.4
0
Exon Skipping
279
chr20:49847042-49847320
-
71.57
87.91
0
Intron Retention
9719
chr20:49801629-49811347
-
7.52
38.88
0



Orthologous genes[edit]

Organism Assembly Gene ID Gene Name Orthology Type

Human hg38 ENSG00000111799 COL12A1 2-to-1
Human hg19 ENSG00000111799 COL12A1 2-to-1
Mouse mm10 ENSMUSG00000032332 Col12a1 2-to-1
Mouse mm9 ENSMUSG00000032332 Col12a1 2-to-1
Rat rn6 ENSRNOG00000058470 Col12a1 2-to-1
Cow bosTau6 ENSBTAG00000020056 COL12A1 1-to-1
Chicken galGal4 ENSGALG00000015908 COL12A1 2-to-1
Fruitfly dm6 FBgn0035798 frac 13-to-1