DreEX0022912 @ danRer10
Exon Skipping
Gene
ENSDARG00000019601 | col12a1b
Description
collagen, type XII, alpha 1b [Source:ZFIN;Acc:ZDB-GENE-120215-116]
Coordinates
chr20:49768289-49775187:-
Coord C1 exon
chr20:49775055-49775187
Coord A exon
chr20:49771545-49771565
Coord C2 exon
chr20:49768289-49768428
Length
21 bp
Sequences
Splice sites
3' ss Seq
TGTTGTTTATCTTTTTCTAGTGT
3' ss Score
8.88
5' ss Seq
CCGGTATGT
5' ss Score
9.2
Exon sequences
Seq C1 exon
GAAATCCTGGCTCGTGAAGAGACAAGCCACCTTCTGACTGAATTAGACCCAGACACGGAGTATGATGTCACTGTCACAGCCATCTACCCCGATGAGTCGGAGAGCGAGGATCTGATGGGGAGCCAACGCACAT
Seq A exon
TGTCAAAGCTCATTACACCCG
Seq C2 exon
TGCCCACTGGACCCCCACAAAACCTCCAGGTCTTCAACGCCACCACAACAACCCTAACTGTGAAATGGGACCACGCACCAGGCCCTGTCCAGAGCTACAAAGTCACCCACCAGCCCGTCGCTGGAGGAAAACCATTATCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000019601_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.859 A=1.000 C2=0.709
Domain overlap (PFAM):
C1:
PF0004116=fn3=PD(43.2=77.8)
A:
NO
C2:
PF0004116=fn3=PU(53.8=91.5)
Main Inclusion Isoform:
ENSDART00000025926fB2011
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCCATCTACCCCGATGAGTC
R:
TTGTTGTGGTGGCGTTGAAGA
Band lengths:
107-128
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]