BtaEX6048025 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000020056 | COL12A1
Description
collagen, type XII, alpha 1 [Source:HGNC Symbol;Acc:HGNC:2188]
Coordinates
chr9:14924896-14925643:-
Coord C1 exon
chr9:14925511-14925643
Coord A exon
chr9:14925374-14925400
Coord C2 exon
chr9:14924896-14925038
Length
27 bp
Sequences
Splice sites
3' ss Seq
TCTCTTTTTTTTTTTTTTAGTGC
3' ss Score
10.94
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
Exon sequences
Seq C1 exon
ACCATCCTAAATGGAGATGAGAATACTCTGGTGTTTCAAAACCTGAACCCCAACACTCTCTATGAAGTTTCTGTTACCGCCATTTATCCTGATGAGTCAGAAAGCGATGACCTGATTGGCAGTGAGCGTACAC
Seq A exon
TGCGTTTGATACCCTTAACAACACAAG
Seq C2 exon
CTCCAAAGAGTGGCCCACGAAACCTTCAGGTGTACAATGCAACATCCAATAGCTTGACTGTTAAGTGGGATCCTGCTAGTGGTCGTGTGCAGAAATACAGAATCACCTACCAGCCTTCGACAGGGGAAGGCAATGAACAAACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000020056-'29-33,'29-32,30-33=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.556 A=1.000 C2=0.583
Domain overlap (PFAM):
C1:
PF0004116=fn3=PD(43.0=75.6)
A:
NO
C2:
PF0004116=fn3=PU(53.7=91.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGCGATGACCTGATTGGCAG
R:
GACCACTAGCAGGATCCCACT
Band lengths:
116-143
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]