MmuEX6067477 @ mm10
Exon Skipping
Gene
ENSMUSG00000032332 | Col12a1
Description
collagen, type XII, alpha 1 [Source:MGI Symbol;Acc:MGI:88448]
Coordinates
chr9:79655399-79656844:-
Coord C1 exon
chr9:79656712-79656844
Coord A exon
chr9:79656579-79656605
Coord C2 exon
chr9:79655399-79655541
Length
27 bp
Sequences
Splice sites
3' ss Seq
CAAATTCTGTTTTCTTTTAGTGC
3' ss Score
8.59
5' ss Seq
AAGGTAAAA
5' ss Score
8.38
Exon sequences
Seq C1 exon
ACCATTTTAAATGGAGATGAAAATACTTTGGTGTTTGAAAATCTGAACCCCAATACTCCGTATGAAGTCTCCATCACCGCCATCTATCCTGATGAGTCTGAAAGCGAGGACCTGAGTGGCACAGAGCGCACAC
Seq A exon
TGCGTCTGATACCCTTAACAACACAAG
Seq C2 exon
CTCCAAAAAGTGGTCCACGGAACCTTCAGGTGTACAATGCCACATCTAACAGCTTGACTGTTAAGTGGGATCCTGCTAGTGGTCGTGTGCAGAAGTACAGAATCACCTATCAGCCTTCAACAGGAGAAGGCAATGAACAAACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000032332-'41-39,'41-38,42-39
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.911 A=1.000 C2=0.604
Domain overlap (PFAM):
C1:
PF0004116=fn3=PD(43.8=77.8)
A:
NO
C2:
PF0004116=fn3=PU(53.7=91.7)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTGAAAGCGAGGACCTGAGT
R:
GACCACTAGCAGGATCCCACT
Band lengths:
121-148
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types