GgaEX1016314 @ galGal4
Exon Skipping
Gene
ENSGALG00000015908 | COL12A1
Description
collagen alpha-1(XII) chain precursor [Source:RefSeq peptide;Acc:NP_990352]
Coordinates
chr3:80261676-80262386:+
Coord C1 exon
chr3:80261676-80261808
Coord A exon
chr3:80261909-80261935
Coord C2 exon
chr3:80262244-80262386
Length
27 bp
Sequences
Splice sites
3' ss Seq
CTCTTTCTATTTTTTTCTAGTAC
3' ss Score
9.29
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
Exon sequences
Seq C1 exon
AGTATTGTAAATGGAGATGTCAACAGTCTGCTCTTTGAAAATCTGAACCCAGATACATTGTATGAAGTCTCGGTTACTGCCATTTATCCTGATGAATCAGAAAGTGATGACTTGATTGGCAGTGAACGAACAT
Seq A exon
TACCCTTGGTACCTATTACAACACCAG
Seq C2 exon
CTCCAAAGAGTGGTCCACGAAACCTTCAAGTGTACAATGCAACTTCACACAGTTTGACTGTAAAGTGGGATCCTGCCAGTGGTCGAGTGCAGAGATACAAGATCATTTACCAGCCTATCAATGGAGATGGCCCAGAACAATCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000015908-'50-44,'50-43,51-44
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.289 A=1.000 C2=0.396
Domain overlap (PFAM):
C1:
PF0004116=fn3=PD(43.0=75.6)
A:
NO
C2:
PF0004116=fn3=PU(53.7=91.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGACTTGATTGGCAGTGAACGA
R:
ATCTCTGCACTCGACCACTGG
Band lengths:
122-149
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]