RnoEX0022807 @ rn6
Exon Skipping
Gene
ENSRNOG00000058470 | Col12a1
Description
collagen type XII alpha 1 chain [Source:RGD Symbol;Acc:2374]
Coordinates
chr8:87095202-87096641:-
Coord C1 exon
chr8:87096509-87096641
Coord A exon
chr8:87096376-87096402
Coord C2 exon
chr8:87095202-87095344
Length
27 bp
Sequences
Splice sites
3' ss Seq
CTAATTCTGTTTTCTTTCAGTGC
3' ss Score
10.04
5' ss Seq
AAGGTAAAA
5' ss Score
8.38
Exon sequences
Seq C1 exon
ACCATCTTAAATGGAGATGAAAATACCTTGCTGTTTGAAAATCTGGACCCCAACACTCTGTATGATGTCTCCATCACTGCCATTTATCCCGATGAGTCTGAAAGCGAGGACCTGAGTGGCAGCGAGCGCACAT
Seq A exon
TGCGTCTGATACCCTTAACGACACAAG
Seq C2 exon
CTCCAAAAAGTGGTCCACGGAACCTGCAGGTGTACAATGCCACATCTAACAGTTTGACTGTTAAGTGGGACCCTGCTAGTGGTCGTGTGCAAAAATACAGAATCACCTATCAGCCTTCAACTGGAGAAGGCAATGAGCAAACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000058470-'45-51,'45-50,46-51
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.667 A=1.000 C2=0.604
Domain overlap (PFAM):
C1:
PF0004116=fn3=PD(43.8=77.8)
A:
NO
C2:
PF0004116=fn3=PU(53.7=91.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTGAAAGCGAGGACCTGAGT
R:
AGCAGGGTCCCACTTAACAGT
Band lengths:
114-141
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]