DmeINT0031988 @ dm6
Intron Retention
Gene
FBgn0035798 | frac
Description
The gene faulty attraction is referred to in FlyBase by the symbol Dmelfrac (CG7526, FBgn0035798). It is a protein_coding_gene from Dmel. It has 6 annotated transcripts and 6 polypeptides (2 unique). Gene sequence location is 3L:7562610..7569499. Its molecular function is described by: calcium ion binding. It is involved in the biological process described with: axon target recognition. 11 alleles are reported. The phenotypes of these alleles manifest in: segmental nerve branch SNa of A1-7; intersegmental nerve branch ISNb of A1-7. The phenotypic classes of alleles include: fertile; neuroanatomy defective; viable. Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of high expression to a trough of very low expression. Peak expression observed within 12-18 embryonic stages.
Coordinates
chr3L:7562610-7563133:+
Coord C1 exon
chr3L:7562610-7562639
Coord A exon
chr3L:7562640-7563008
Coord C2 exon
chr3L:7563009-7563133
Length
369 bp
Sequences
Splice sites
5' ss Seq
TCGGTGCGT
5' ss Score
8.67
3' ss Seq
TTATAAAATTTGAACCCAAGAAC
3' ss Score
0.36
Exon sequences
Seq C1 exon
TCAGTCTTGTCTGGGCTCTCGACGGAATCG
Seq A exon
GTGCGTTTTCCAAAATAAAAATACTATTCCTGGTTTTTCCTTAAACTACAGAAGTATATATACAGACTGTTTTTATGTGTTTTAAATCAATTAAAGTAGTGAAATTCTCAGTGAACTCTAATTGCAAAAAGTGCCTTCGTTTGATGTAAATCCGACACATTTACTTCACGAATGACCTGTGAATATATGTAAAAAGTGTTGAACATGTGCTATTTATAAACCCGCCTTAATCTTAATGGCTTTGCTCCTCTATATGCCGCTACATATATAGATCTTCTCCCATAAATATGTTGGAGAACAAATAAAAAAAAGAAACGAATGTCGTGAAATCTTATTAATGTATTCTTTTTTATAAAATTTGAACCCAAG
Seq C2 exon
AACCCGATACAAGTGAGAGTGGAAAGGTGTGTGGCAGCTGTTCTATAAGGATCGGAAATAGGGCTGCAGAATGTGGGCGGCAAAATATGTTTTATGCGCGCTAGCATGCGTTGCATTTGCTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
FBgn0035798:FBtr0290277:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
FBpp0290440
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
FBpp0288716, FBpp0290439, FBpp0304223, FBpp0304224
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Neural diversity
- Neurogenesis
- Neuronal activity
- Splicing factor regulation (brain)
- Splicing factor regulation (SL2)