Special

ENSMUSG00000016356 @ mm10

Biotype
protein_coding
Gene Symbol
Col20a1
Description
collagen, type XX, alpha 1 [Source:MGI Symbol;Acc:MGI:1920618]
Coordinates
chr2:180986535-181017540:+
Assembly
mm10
Other assemblies
mm9

GENOMIC BROWSER[edit]

EXPRESSION VALUES[edit]

SPECIAL DATASETS

  • Pre-implantation embryo development
  • Ribosome-engaged transcriptomes of neuronal types
  • Neural differentiation time course
  • Muscular differentiation time course
  • Spermatogenesis cell types
  • Reprogramming of fibroblasts to iPSCs
  • Hematopoietic precursors and cell types

EVENTS AND AS PROFILES[edit]

Associated events[edit]

Event
Type
Length
Coordinates
Strand
PSI Average
PSI Range
Annotated Functions
Alternative 3'ss
0
NA
+
16.62
35.19
0
Alternative 3'ss
13
chr2:181001214-181001226
+
83.38
35.19
0
Alternative 3'ss
0
NA
+
15.46
29.67
0
Alternative 3'ss
3
chr2:181002329-181002331
+
84.06
26.03
0
Alternative 5'ss
0
NA
+
12.78
28.07
0
Alternative 5'ss
31
chr2:181015579-181015609
+
87.22
28.07
0
Alternative 5'ss
0
NA
+
93.09
37.87
0
Alternative 5'ss
25
chr2:181013444-181013468
+
6.39
36.33
0
Exon Skipping
130
chr2:181001214-181001343
+
97.18
100
0
Exon Skipping
139
chr2:181003345-181003483
+
82.2
57.48
0
Exon Skipping
126
chr2:180993243-180993368
+
97.13
11.43
0
Exon Skipping
133
chr2:181000365-181000497
+
96.55
20.9
0
Exon Skipping
159
chr2:181007567-181007725
+
89.98
100
0
Exon Skipping
110
chr2:181007126-181007235
+
98.83
25.63
0
Intron Retention
2406
chr2:180986614-180989019
+
32.21
63.64
0
Intron Retention
958
chr2:180997396-180998353
+
23.25
41.34
0
Intron Retention
216
chr2:180999817-181000032
+
31.2
53.06
0
Intron Retention
3303
chr2:180989131-180992433
+
17.37
35.41
0
Intron Retention
278
chr2:181006848-181007125
+
24.95
62.98
0
Intron Retention
331
chr2:181007236-181007566
+
23.65
63.27
0
Intron Retention
70
chr2:181007726-181007795
+
14.53
32.71
0
Intron Retention
73
chr2:181013163-181013235
+
7.4
70.3
0
Intron Retention
100
chr2:181013290-181013389
+
14.02
70.64
0
Intron Retention
426
chr2:181013444-181013869
+
5.69
71.85
0
Intron Retention
275
chr2:180992578-180992852
+
7.3
61.54
0
Intron Retention
864
chr2:181013924-181014787
+
4.96
60.29
0
Intron Retention
567
chr2:181014860-181015426
+
7.59
65.35
0
Intron Retention
80
chr2:181015463-181015542
+
9.14
66.23
0
Intron Retention
80
chr2:181015610-181015689
+
16.95
57.3
0
Intron Retention
397
chr2:181015858-181016254
+
9.82
58.85
0
Intron Retention
986
chr2:181016333-181017318
+
14.03
73.63
0
Intron Retention
174
chr2:180996508-180996681
+
16.45
48.22
0
Intron Retention
414
chr2:180996852-180997265
+
44.27
87.61
0



Orthologous genes[edit]

Organism Assembly Gene ID Gene Name Orthology Type

Human hg38 ENSG00000101203 COL20A1 1-to-1
Human hg19 ENSG00000101203 COL20A1 1-to-1
Rat rn6 ENSRNOG00000010326 Col20a1 1-to-1
Cow bosTau6 ENSBTAG00000004582 COL20A1 1-to-1
Chicken galGal3 ENSGALG00000005797 COL20A1 1-to-1
Fruitfly dm6 FBgn0035798 frac 11-to-1
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