MmuEX0012207 @ mm10
Exon Skipping
Gene
ENSMUSG00000016356 | Col20a1
Description
collagen, type XX, alpha 1 [Source:MGI Symbol;Acc:MGI:1920618]
Coordinates
chr2:181002329-181006847:+
Coord C1 exon
chr2:181002329-181002367
Coord A exon
chr2:181003345-181003483
Coord C2 exon
chr2:181006705-181006847
Length
139 bp
Sequences
Splice sites
3' ss Seq
ACCATTCCCTGTTCCACCAGGGT
3' ss Score
9.61
5' ss Seq
CAGGTGCGA
5' ss Score
7.75
Exon sequences
Seq C1 exon
CAGCCTGCCCAGCCCTGCACCCGGACAGTTCCCTCTCAG
Seq A exon
GGTTTGACCTGATGGTGGCCTTTGGCCTCGTGGCAAAGGAGTATGCCTCTATTCGAGGAGTTGCCATGGAGCCCTCAGCCTTGGGTGTGGTCCCAACCTTCACTCTCTTCAAGGATGCTCAACTGATGCGTCGGGTCAG
Seq C2 exon
TGACATCTACCCAGCAACCCTGCCACCAGAACACACCATTGTCTTCCTTGTGCGTCTACTCCCTGAGACACCCCGGGAAGCCTTTGCACTGTGGCAGATGATGGCTGAAGATTTCCAGCCCATCCTCGGGGTTCTGCTGGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000016356-'26-35,'26-34,28-35
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
Show structural model
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCTGCACCCGGACAGTTC
R:
CATCCAGCAGAACCCCGAGG
Band lengths:
170-309
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types