BtaEX6065466 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000004582 | COL20A1
Description
collagen, type XX, alpha 1 [Source:HGNC Symbol;Acc:HGNC:14670]
Coordinates
chr13:54740992-54742709:-
Coord C1 exon
chr13:54742674-54742709
Coord A exon
chr13:54741889-54742027
Coord C2 exon
chr13:54740992-54741134
Length
139 bp
Sequences
Splice sites
3' ss Seq
GATGGCGCCCCCCTCCCAAGGCT
3' ss Score
5.06
5' ss Seq
CAGGTGGGA
5' ss Score
6.71
Exon sequences
Seq C1 exon
CCTGCCCGGCCCTCCACCTGGATGGCTCCCTCCCAG
Seq A exon
GCTTTGACCTGATGGCGGCCTTCGGGCTGGTGGAGAAAGAATATGCCTCCATCCGCGGCGTGGCCATGGAGCCCTCGGCCTTTGGCCCCACCAGGACGTTCACACTCTTCAAGGACTCTCAGCTGACCCGGCGGGCCAG
Seq C2 exon
CGACATCCACCTGGCCACCCTGCCCCCGGAGCACACAGTCGTCTTCCTCCTGCGCCTGCTCCCTGAGACTCCCCGAGAGGCCTTTGCATTGTGGCAGGTGGCAAGCGAGGACTTCCAGCCCATCCTCGGGGTTCTGCTGGACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000004582-'29-27,'29-26,30-27=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.008 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCTCCACCTGGATGGCTC
R:
CGTCCAGCAGAACCCCGAG
Band lengths:
170-309
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]