Special

ENSG00000101203 @ hg38

Biotype
protein_coding
Gene Symbol
COL20A1
Description
collagen type XX alpha 1 chain [Source:HGNC Symbol;Acc:HGNC:14670]
Coordinates
chr20:63293186-63334851:+
Assembly
Other assemblies

GENOMIC BROWSER[edit]


EXPRESSION VALUES[edit]


SPECIAL DATASETS

  • The Cancer Genome Atlas (TCGA)
  • Genotype-Tissue Expression Project (GTEx)
  • Autistic and control brains
  • Pre-implantation embryo development

EVENTS AND AS PROFILES[edit]

Associated events[edit]

Event
Type
Length
Coordinates
Strand
PSI Average
PSI Range
Annotated Functions
Alternative 3'ss
0
NA
+
37.48
38.74
0
Alternative 3'ss
3
chr20:63315401-63315403
+
60.43
38.03
0
Alternative 3'ss
0
NA
+
94.64
22.56
0
Alternative 3'ss
330
chr20:63321728-63322057
+
5.36
22.56
0
Exon Skipping
67
chr20:63328079-63328145
+
95.06
26.18
0
Exon Skipping
133
chr20:63313117-63313249
+
84.73
14.51
0
Exon Skipping
96
chr20:63325269-63325364
+
88.13
25.4
0
Exon Skipping
172
chr20:63326485-63326656
+
7.64
15.61
0
Exon Skipping
312
chr20:63328957-63329268
+
15
33.41
0
Exon Skipping
54
chr20:63325668-63325721
+
95.8
12.74
0
Exon Skipping
120
chr20:63307971-63308090
+
97.19
10.26
0
Intron Retention
465
chr20:63309916-63310380
+
47.01
32.46
0
Intron Retention
85
chr20:63311540-63311624
+
11.54
20.06
0
Intron Retention
167
chr20:63311749-63311915
+
19.91
22.79
0
Intron Retention
364
chr20:63312056-63312419
+
29.3
25.33
0
Intron Retention
182
chr20:63312935-63313116
+
10.18
20.21
0
Intron Retention
493
chr20:63313250-63313742
+
30.52
65.1
0
Intron Retention
180
chr20:63313892-63314071
+
10.43
35.47
0
Intron Retention
2720
chr20:63295190-63297909
+
14.84
61.64
0
Intron Retention
286
chr20:63319201-63319486
+
29.05
46.51
0
Intron Retention
644
chr20:63320369-63321012
+
12.78
27.59
0
Intron Retention
7396
chr20:63298021-63305416
+
9.7
22.17
0
Intron Retention
602
chr20:63326150-63326751
+
8.69
28.39
0
Intron Retention
1128
chr20:63326824-63327951
+
10.91
40.09
0
Intron Retention
1086
chr20:63328499-63329584
+
25.07
39.01
0
Intron Retention
320
chr20:63305561-63305880
+
9.07
20.57
0
Intron Retention
322
chr20:63307649-63307970
+
22.78
52.69
0
Intron Retention
451
chr20:63308091-63308541
+
38.11
57.08
0
Intron Retention
626
chr20:63308707-63309332
+
13.51
34.19
0



Orthologous genes[edit]

Organism Assembly Gene ID Gene Name Orthology Type

Mouse mm10 ENSMUSG00000016356 Col20a1 1-to-1
Mouse mm9 ENSMUSG00000016356 Col20a1 1-to-1
Rat rn6 ENSRNOG00000010326 Col20a1 1-to-1
Cow bosTau6 ENSBTAG00000004582 COL20A1 1-to-1
Chicken galGal4 ENSGALG00000005797 COL20A1 1-to-1
Chicken galGal3 ENSGALG00000005797 COL20A1 1-to-1
Zebrafish danRer10 ENSDARG00000037517 slc35c2 1-to-1
Fruitfly dm6 FBgn0035798 frac 10-to-1