Special

ENSRNOG00000010326 @ rn6

Biotype
protein_coding
Gene Symbol
Col20a1
Description
collagen type XX alpha 1 chain [Source:RGD Symbol;Acc:1563901]
Coordinates
chr3:176494768-176526018:+
Assembly
rn6

GENOMIC BROWSER[edit]

EXPRESSION VALUES[edit]


EVENTS AND AS PROFILES[edit]

Associated events[edit]

Event
Type
Length
Coordinates
Strand
PSI Average
PSI Range
Annotated Functions
Alternative 3'ss
3
chr3:176510016-176510018
+
84.93
13.64
0
Alternative 5'ss
0
NA
+
63.33
93.62
0
Alternative 5'ss
178
chr3:176521806-176521983
+
12.51
37.47
0
Alternative 5'ss
264
chr3:176521806-176522069
+
24.16
69.57
0
Alternative 5'ss
0
NA
+
89.34
59.46
0
Alternative 5'ss
489
chr3:176522275-176522763
+
4.59
59.46
0
Alternative 5'ss
0
NA
+
13.64
15.82
0
Alternative 5'ss
4
chr3:176500071-176500074
+
86.36
15.82
0
Exon Skipping
146
chr3:176505669-176505814
+
62.97
78.2
0
Exon Skipping
87
chr3:176516277-176516363
+
96.92
16
0
Intron Retention
2422
chr3:176494856-176497277
+
64.88
96.45
0
Intron Retention
406
chr3:176504145-176504550
+
50.46
73.85
0
Intron Retention
988
chr3:176504681-176505668
+
27.44
32.37
0
Intron Retention
85
chr3:176505815-176505899
+
10.61
26.6
0
Intron Retention
400
chr3:176508185-176508584
+
18.89
33.9
0
Intron Retention
996
chr3:176509020-176510015
+
10.64
23.43
0
Intron Retention
2542
chr3:176497389-176499930
+
28.46
32.31
0
Intron Retention
287
chr3:176514645-176514931
+
27.9
54.17
0
Intron Retention
265
chr3:176515042-176515306
+
24.57
48.6
0
Intron Retention
71
chr3:176521529-176521599
+
14.99
86.81
0
Intron Retention
98
chr3:176521654-176521751
+
21.08
49.27
0
Intron Retention
240
chr3:176500075-176500314
+
14.39
24.93
0
Intron Retention
415
chr3:176521806-176522220
+
12.99
50.54
0
Intron Retention
901
chr3:176522275-176523175
+
20.88
69.69
0
Intron Retention
382
chr3:176524302-176524683
+
8.53
42.64
0
Intron Retention
1027
chr3:176524762-176525788
+
13.28
62.11
0



Orthologous genes[edit]

Organism Assembly Gene ID Gene Name Orthology Type

Human hg38 ENSG00000101203 COL20A1 1-to-1
Human hg19 ENSG00000101203 COL20A1 1-to-1
Mouse mm10 ENSMUSG00000016356 Col20a1 1-to-1
Mouse mm9 ENSMUSG00000016356 Col20a1 1-to-1
Cow bosTau6 ENSBTAG00000004582 COL20A1 1-to-1
Chicken galGal4 ENSGALG00000005797 COL20A1 1-to-1
Chicken galGal3 ENSGALG00000005797 COL20A1 1-to-1
Zebrafish danRer10 ENSDARG00000037517 slc35c2 1-to-1
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