Special

ENSG00000101203 @ hg19

Biotype
protein_coding
Gene Symbol
COL20A1
Description
collagen, type XX, alpha 1 [Source:HGNC Symbol;Acc:14670]
Coordinates
chr20:61924538-61966203:+
Assembly
Other assemblies

GENOMIC BROWSER[edit]


EXPRESSION VALUES[edit]


SPECIAL DATASETS

  • The Cancer Genome Atlas (TCGA)
  • Genotype-Tissue Expression Project (GTEx)
  • Autistic and control brains
  • Pre-implantation embryo development

EVENTS AND AS PROFILES[edit]

Associated events[edit]

Event
Type
Length
Coordinates
Strand
PSI Average
PSI Range
Annotated Functions
Alternative 3'ss
0
NA
+
38.28
38.77
0
Alternative 3'ss
3
chr20:61946753-61946755
+
61.72
38.77
0
Alternative 5'ss
0
NA
+
6.58
21.21
0
Alternative 5'ss
18
chr20:61959480-61959497
+
93.42
21.21
0
Exon Skipping
133
chr20:61944469-61944601
+
84.77
14.51
0
Exon Skipping
96
chr20:61956621-61956716
+
88.13
25.4
0
Exon Skipping
54
chr20:61957020-61957073
+
94.5
13.64
0
Exon Skipping
144
chr20:61953080-61953223
+
2.57
12.33
0
Exon Skipping
120
chr20:61939323-61939442
+
97.19
10.26
0
Intron Retention
465
chr20:61941268-61941732
+
48.35
31.44
0
Intron Retention
85
chr20:61942892-61942976
+
11.54
20.06
0
Intron Retention
167
chr20:61943101-61943267
+
19.91
22.79
0
Intron Retention
364
chr20:61943408-61943771
+
29.3
25.33
0
Intron Retention
182
chr20:61944287-61944468
+
10.18
20.21
0
Intron Retention
493
chr20:61944602-61945094
+
30.52
65.1
0
Intron Retention
180
chr20:61945244-61945423
+
10.43
35.47
0
Intron Retention
2720
chr20:61926542-61929261
+
14.8
61.64
0
Intron Retention
286
chr20:61950553-61950838
+
29.05
46.51
0
Intron Retention
644
chr20:61951721-61952364
+
12.78
27.59
0
Intron Retention
7396
chr20:61929373-61936768
+
10.2
23.89
0
Intron Retention
602
chr20:61957502-61958103
+
8.11
24.05
0
Intron Retention
1128
chr20:61958176-61959303
+
10.35
41.33
0
Intron Retention
1086
chr20:61959851-61960936
+
25.72
37.64
0
Intron Retention
320
chr20:61936913-61937232
+
9.17
22.89
0
Intron Retention
322
chr20:61939001-61939322
+
23.01
52.2
0
Intron Retention
451
chr20:61939443-61939893
+
44.6
56.28
0
Intron Retention
626
chr20:61940059-61940684
+
14.1
35.95
0



Orthologous genes[edit]

Organism Assembly Gene ID Gene Name Orthology Type

Mouse mm10 ENSMUSG00000016356 Col20a1 1-to-1
Mouse mm9 ENSMUSG00000016356 Col20a1 1-to-1
Rat rn6 ENSRNOG00000010326 Col20a1 1-to-1
Cow bosTau6 ENSBTAG00000004582 COL20A1 1-to-1
Chicken galGal4 ENSGALG00000005797 COL20A1 1-to-1
Chicken galGal3 ENSGALG00000005797 COL20A1 1-to-1
Fruitfly dm6 FBgn0035798 frac 10-to-1