Special

ENSMUSG00000016356 @ mm9

Biotype
protein_coding
Gene Symbol
Col20a1
Description
collagen, type XX, alpha 1 [Source:MGI Symbol;Acc:MGI:1920618]
Coordinates
chr2:180721240-180752245:+
Assembly
Other assemblies

GENOMIC BROWSER[edit]


EXPRESSION VALUES[edit]


SPECIAL DATASETS

  • Pre-implantation embryo development
  • Neural differentiation time course
  • Muscular differentiation time course
  • Spermatogenesis cell types
  • Reprogramming of fibroblasts to iPSCs
  • Hematopoietic precursors and cell types

EVENTS AND AS PROFILES[edit]

Associated events[edit]

Event
Type
Length
Coordinates
Strand
PSI Average
PSI Range
Annotated Functions
Alternative 3'ss
0
NA
+
16.67
35
0
Alternative 3'ss
13
chr2:180735919-180735931
+
83.33
35
0
Alternative 5'ss
0
NA
+
12.45
31.5
0
Alternative 5'ss
31
chr2:180750284-180750314
+
87.55
31.5
0
Exon Skipping
139
chr2:180738050-180738188
+
81.83
55.3
0
Exon Skipping
126
chr2:180727948-180728073
+
96.31
13.33
0
Exon Skipping
133
chr2:180735070-180735202
+
96.64
22.22
0
Exon Skipping
159
chr2:180742272-180742430
+
92.46
36.37
0
Intron Retention
2406
chr2:180721319-180723724
+
32.21
63.64
0
Intron Retention
958
chr2:180732101-180733058
+
22.34
41.34
0
Intron Retention
216
chr2:180734522-180734737
+
31.75
39.41
0
Intron Retention
3303
chr2:180723836-180727138
+
16.84
35.41
0
Intron Retention
278
chr2:180741553-180741830
+
24.85
62.98
0
Intron Retention
331
chr2:180741941-180742271
+
24.62
60.24
0
Intron Retention
70
chr2:180742431-180742500
+
14.85
31.89
0
Intron Retention
73
chr2:180747868-180747940
+
9.81
85.91
0
Intron Retention
100
chr2:180747995-180748094
+
14.77
70.64
0
Intron Retention
426
chr2:180748149-180748574
+
5.73
71.85
0
Intron Retention
275
chr2:180727283-180727557
+
7.65
62.26
0
Intron Retention
864
chr2:180748629-180749492
+
4.91
60.29
0
Intron Retention
567
chr2:180749565-180750131
+
7.58
65.35
0
Intron Retention
80
chr2:180750168-180750247
+
8.93
65.94
0
Intron Retention
80
chr2:180750315-180750394
+
16.66
55.75
0
Intron Retention
397
chr2:180750563-180750959
+
9.76
59.89
0
Intron Retention
986
chr2:180751038-180752023
+
13.91
73.63
0
Intron Retention
174
chr2:180731213-180731386
+
16.71
48.22
0
Intron Retention
414
chr2:180731557-180731970
+
46.26
84.56
0



Orthologous genes[edit]

Organism Assembly Gene ID Gene Name Orthology Type

Human hg38 ENSG00000101203 COL20A1 1-to-1
Human hg19 ENSG00000101203 COL20A1 1-to-1
Rat rn6 ENSRNOG00000010326 Col20a1 1-to-1
Cow bosTau6 ENSBTAG00000004582 COL20A1 1-to-1
Chicken galGal4 ENSGALG00000005797 COL20A1 1-to-1
Chicken galGal3 ENSGALG00000005797 COL20A1 1-to-1
Fruitfly dm6 FBgn0035798 frac 11-to-1