HsaEX6079159 @ hg19
Exon Skipping
Gene
ENSG00000101203 | COL20A1
Description
collagen, type XX, alpha 1 [Source:HGNC Symbol;Acc:14670]
Coordinates
chr20:61952365-61953463:+
Coord C1 exon
chr20:61952365-61952451
Coord A exon
chr20:61953080-61953223
Coord C2 exon
chr20:61953410-61953463
Length
144 bp
Sequences
Splice sites
3' ss Seq
CTGCCTCTGCTCACCCCAAGGTT
3' ss Score
7.35
5' ss Seq
AGGGAAGGA
5' ss Score
-1.73
Exon sequences
Seq C1 exon
AGGGATGGAGAGACCTGCCCCGCCTTCGTGTCTGCCTGTTCCTGTTCCTCAGAGACCCCTGGGCCCCCAGGACCTCAAGGACCCCCA
Seq A exon
GTTCCAGCGCCCCACAGGTGACGGCTGGGGCTTCCAGAGCTGGCTCTGGGACCGGTCAAGCACACTCTCTCTGAGCTCAGTGTCCACAGCCTTGTCTACTCAGGGGGCCGGGGTTTGAACCCAGAACTGCCTGACTATGAGAGG
Seq C2 exon
GGCCTCCCTGGGAGGAATGGCACCCCAGGAGAGCAGGGCTTCCCAGGGCCCAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000101203-'27-32,'27-31,28-32=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.517 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=PU(18.6=37.9)
A:
NA
C2:
PF0139113=Collagen=FE(28.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGATGGAGAGACCTGCCCC
R:
TGGGAAGCCCTGCTCTCC
Band lengths:
130-274
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)